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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31538884_31540637_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31538884 - 31540637
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCTTTTACA
Flanking Amino Acid:
SSISGRNLRNSSSSASPLYS
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
100
1.24
0.5
100
0
Major PPT
89.6
0.89
0.7
84.2
30
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
73
0.72
1.5
81.53
33.1

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912