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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31540742_31541271_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31540742 - 31541271
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGAGCTTTAATT
Flanking Amino Acid:
LPDLSLDNMIAGQGTVAGEE
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.8
0.58
1.1
79.6
37.7
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
63.9
0.51
1.4
71.73
39.6

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912