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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31541452_31542517_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31541452 - 31542517
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
IKQYEPLLAVGTSNGSVLVF
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.6
0.69
0.8
76.7
31.7
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912