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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31549069_31550059_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31549069 - 31550059
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGTAGTAAATT
Flanking Amino Acid:
AIEMIKVSHLKQYLAVIFKD
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
45.1
-0.2
2.4
66.79
44.4

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912