About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31550169_31550477_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31550169 - 31550477
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTCCTGAACA
Flanking Amino Acid:
SKNFPTVTALEWSPSHNLKS
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.5
0.62
0.9
71.9
37.5
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
79.3
0.92
1.3
84.45
35.5

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912