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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31550603_31551020_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31550603 - 31551020
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTG
5'SS Class:
major
3'SS Sequence:
GTTCTCTTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TTCTCTTTAAAG
Flanking Amino Acid:
EVSSVESSVISLLQEAESKS
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
70.7
39.5
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
74.5
0.55
1
74.6
34.1
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
71.5
0.54
1.4
72.3
40.7

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912