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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31551169_31551525_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31551169 - 31551525
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GAAATGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCTTCTGAAAT
Flanking Amino Acid:
VKDSARIPPDGSMGSITCIA
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
77.9
30.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
65.7
0.35
1.1
54.4
49.2
Minor 5ss
43.9
-0.7
2.7
58.7
38.8
Minor BPS
60.3
0.4
1.6
74.71
41.6

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912