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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31551633_31552117_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31551633 - 31552117
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TGATGGATAAAA
Flanking Amino Acid:
NFWDLKARVSRGIPTHRSWV
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
70
40.8
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
75.4
0.57
0.8
73.5
36.3
Minor 5ss
33
-1.9
3.6
46.7
48.6
Minor BPS
40.3
-0.7
2.5
55.44
42.8

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912