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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31552233_31553981_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31552233 - 31553981
Intron Length:
1749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TCAACTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
CATATCTCAACT
Flanking Amino Acid:
DGAEVWDSKEVQMVSSLRSG
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
66.3
0.37
1.1
63.7
41.7
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
60
0.39
1.6
73.99
42.5

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912