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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31554154_31557556_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31554154 - 31557556
Intron Length:
3403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
AGCCACTTAACA
Flanking Amino Acid:
CFRMDEQDLIEPAWCPYLLV
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
85.6
0.8
0.8
83.6
31.4
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
60.7
0.33
1.5
65.53
40.1

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912