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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31559008_31559981_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31559008 - 31559981
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATTACTTACAT
Flanking Amino Acid:
LIQEQLNSLSNDLKKLLLDP
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
58.9
0.36
1.9
79.86
41.4

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912