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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31560975_31561293_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31560975 - 31561293
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
ATTTTTCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTCTTTATTT
Flanking Amino Acid:
DILCENHYFQKFQLERVNLQ
Intron Amino Acid Position:
976

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
100
1.24
0.5
100
0
Major PPT
83.1
0.74
0.9
78.5
34.4
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
71.2
0.74
1.5
84.84
36

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912