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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31561390_31562557_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31561390 - 31562557
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGGG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTGCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TTGTGGTCAAAG
Flanking Amino Acid:
CADQLLLLGQTDRAVQLLLE
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
60.9
43.8
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
82
0.72
0.9
77
37.2
Minor 5ss
34.5
-1.8
2.9
41.3
45.1
Minor BPS
41.1
-0.8
2.5
52.59
47.7

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912