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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31564737_31565610_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31564737 - 31565610
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCTCACTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTCTCACT
Flanking Amino Acid:
CFTKVAEMLHSMRYFDRAAL
Intron Amino Acid Position:
1144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.5
0.73
0.8
75.9
32.3
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
62.9
0.49
2.1
88.42
36.8

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912