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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3156507_3156956_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3156507 - 3156956
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTTACA
Flanking Amino Acid:
NRLQNSVQTQIYNFIPNIMD
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
62.2
0.38
1.6
75.3
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003077
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003161
3137232 - 3160356
23125