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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3157134_3157612_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3157134 - 3157612
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
AATCTTCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTGCTAAATC
Flanking Amino Acid:
IDAFINKMEQEKGKSHSEFT
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.3
0.64
0.8
74.7
35.3
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
54.8
0.13
2.1
69.44
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003077
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003161
3137232 - 3160356
23125