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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31573228_31575663_F

Intron Information:

Intron Rank:
149372
Intron Class:
major
Intron Phase:
Intron Coordinates:
31573228 - 31575663
Intron Length:
2436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AGATCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.2
0.59
0.9
69.6
35.1
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
57.2
0.31
1.7
71.73
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030353
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046078
31573181 - 31576762
3582