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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31581079_31591488_R

Intron Information:

Intron Rank:
136853
Intron Class:
major
Intron Phase:
Intron Coordinates:
31581079 - 31591488
Intron Length:
10410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGCCTA
5'SS Class:
major
3'SS Sequence:
TCCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTAGTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
59.8
46.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
39.6
-1.2
3.4
47.2
48.2
Minor BPS
49
0.01
2.4
79.58
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021123
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035970
31579331 - 31591816
12486