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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3158197_3159542_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3158197 - 3159542
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTTCC
5'SS Class:
major
3'SS Sequence:
TTTGCTAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TCTTTGCTAATT
Flanking Amino Acid:
TKFRDYFIPKDTMIFPMLSP
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
68.5
37.5
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
77.3
0.62
1
75
38.8
Minor 5ss
43
-0.8
2.5
54.2
43
Minor BPS
49.6
0.05
2.3
75.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003077
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003161
3137232 - 3160356
23125