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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31632555_31635755_R

Intron Information:

Intron Rank:
134273
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
31632555 - 31635755
Intron Length:
3201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TGTCCTCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTGTCCTCACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
71.4
41.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.2
0.48
0.9
65.3
35.3
Minor 5ss
54.6
0.16
2.5
73.7
43
Minor BPS
52.5
0.06
2
67.95
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019529
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034954
31632449 - 31639056
6608