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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31632617_31635755_R

Intron Information:

Intron Rank:
134279
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
31632617 - 31635755
Intron Length:
3139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CTTCTATCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
71.4
41.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
54.6
0.16
2.5
73.7
43
Minor BPS
49.5
0.04
1.8
70.47
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019529
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045561
31632537 - 31643154
10618