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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31643561_31657975_R

Intron Information:

Intron Rank:
134276
Intron Class:
major
Intron Phase:
Intron Coordinates:
31643561 - 31657975
Intron Length:
14415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTGT
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTCCTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
69.7
43.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
84.6
0.78
0.7
80
25.5
Minor 5ss
54
0.14
2.6
74.1
42.2
Minor BPS
54
0.12
2
73.01
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019529
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037179
31638424 - 31658167
19744