Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3167896_3168461_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3167896 - 3168461

Intron Length:

566

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAACTATT

5'SS Class:

major

3'SS Sequence:

TTTCCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAA

U12 Branch Point Sequence:

GAGTCCTAAAAT

Flanking Amino Acid:

YKLDAYSKKLEAKYKKLEKR

Intron Amino Acid Position:

132

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

1.1

83.5

Major BPS

72.7

0.57

72.1

31.1

Major PPT

89.6

0.89

0.6

84.7

22.9

Minor 5ss

47.4

-0.3

2.7

65.8

39.5

Minor BPS

57.6

0.32

1.8

71.44

44.8

Associated Gene:

Gene:

BLOC1S2

Ensembl Gene ID:

ENSAPLG00000002893

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042806

3167864 - 3173937

6074

ENSAPLT00000002938

3167864 - 3170871

3008