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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3169194_3173917_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3169194 - 3173917
Intron Length:
4724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTTGAAAT
5'SS Class:
major
3'SS Sequence:
TTTAAGCCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAAGC
Flanking Amino Acid:
RLLKRKNEDYKLLENM
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.2
68.2
36.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
65.4
0.35
1
56.4
44.1
Minor 5ss
39.3
-1.2
2.8
50.9
39.6
Minor BPS
65.7
0.47
1.6
73.03
38.7

Associated Gene:

Gene:
BLOC1S2
Ensembl Gene ID:
ENSAPLG00000002893
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042806
3167864 - 3173937
6074