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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3170208_3170819_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3170208 - 3170819
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
GTGCCCTGATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
CCTTCTCTAACT
Flanking Amino Acid:
LPEAGAQPAKQDPAVETAEE
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.4
56.3
42.8
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
56.6
0.15
1
55.5
40
Minor 5ss
30.5
-2.2
3.5
36.2
41.4
Minor BPS
65.8
0.57
1.7
80.09
42.2

Associated Gene:

Gene:
BLOC1S2
Ensembl Gene ID:
ENSAPLG00000002893
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002938
3167864 - 3170871
3008