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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3176289_3176663_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3176289 - 3176663
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTTCTTCACT
Flanking Amino Acid:
VKLDQSGIQNRVGSLFFVTT
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
70.1
43.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
40.1
-1.1
2.8
50.1
46.1
Minor BPS
72.3
0.78
1.7
88.23
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002513
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030185
3172253 - 3188700
16448
ENSAPLT00000002570
3172253 - 3188700
16448