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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3176747_3177287_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3176747 - 3177287
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTCACTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCTCTTTTCACT
Flanking Amino Acid:
IRNPQASVAQIAVTIILALV
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
73.5
37.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.7
0.83
0.7
78.3
35.2
Minor 5ss
31
-2.2
2.8
36.5
40.6
Minor BPS
51.5
0.13
1.8
67.89
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002513
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030185
3172253 - 3188700
16448
ENSAPLT00000021621
3172253 - 3188700
16448
ENSAPLT00000002570
3172253 - 3188700
16448