About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3177554_3178390_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3177554 - 3178390
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
CAAGCCGTATCT
Flanking Amino Acid:
EVNEPVDTGKEVNSENGAVE
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
76.2
39.9
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
68.7
0.42
0.9
66.7
34.6
Minor 5ss
40
-1.1
3.3
58.7
45.8
Minor BPS
44.7
-0.3
2.3
61.53
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002513
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030185
3172253 - 3188700
16448
ENSAPLT00000021621
3172253 - 3188700
16448
ENSAPLT00000002570
3172253 - 3188700
16448