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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3178508_3179408_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3178508 - 3179408
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
NQALDYFSSIGYECEPFNNP
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.2
0.59
1.1
80
36.9
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002513
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021621
3172253 - 3188700
16448
ENSAPLT00000002570
3172253 - 3188700
16448
ENSAPLT00000030185
3172253 - 3188700
16448