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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3179561_3180672_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3179561 - 3180672
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTGTTTCTATTT
Flanking Amino Acid:
TANAVLILLKKLSRRGRTII
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.8
29.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.6
0.78
0.8
81.9
34.4
Minor 5ss
38.1
-1.3
3.6
56.6
42
Minor BPS
49.2
0.02
1.9
71.43
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002513
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002570
3172253 - 3188700
16448
ENSAPLT00000030185
3172253 - 3188700
16448
ENSAPLT00000021621
3172253 - 3188700
16448