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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31796891_31797056_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31796891 - 31797056
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGACT
5'SS Class:
major
3'SS Sequence:
ACCTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ATATACTAAACA
Flanking Amino Acid:
YPDTRSSCSSGP*
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
74.1
35.9
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
81.2
0.7
0.8
73.1
36.7
Minor 5ss
29.5
-2.3
3.1
41
45
Minor BPS
59.9
0.31
1.9
71.97
39.5

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025382
31796883 - 31872691
75809