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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31800905_31801724_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31800905 - 31801724
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGGACC
5'SS Class:
major
3'SS Sequence:
GCATTTCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAACC
Flanking Amino Acid:
MDKPANCTNELYMMMRDCWH
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
63.8
40.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.1
0.65
0.9
72.4
37.6
Minor 5ss
36.4
-1.5
3.2
54.5
42.5
Minor BPS
71.6
0.66
1.7
85.12
32.5

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036505
31796968 - 31877200
80233
ENSAPLT00000027497
31796968 - 31877200
80233
ENSAPLT00000025382
31796883 - 31872691
75809
ENSAPLT00000012558
31796968 - 31877200
80233