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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31801863_31803696_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31801863 - 31803696
Intron Length:
1834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
CTTTGGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
GATGGACTAATG
Flanking Amino Acid:
FDRVYTHQSDVWSFGVLMWE
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
69.1
41.9
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
78.4
0.64
0.9
72.9
37.4
Minor 5ss
36.4
-1.5
3.4
50
46.3
Minor BPS
38.7
-0.9
2.2
43.19
42

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027497
31796968 - 31877200
80233
ENSAPLT00000025382
31796883 - 31872691
75809
ENSAPLT00000012558
31796968 - 31877200
80233
ENSAPLT00000036505
31796968 - 31877200
80233