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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31805131_31808587_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31805131 - 31808587
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
CAGTACGCATTT
Flanking Amino Acid:
RGMEYLASQKCIHRDLAARN
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.7
40.1
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
88.9
0.88
0.7
81.1
31
Minor 5ss
35.4
-1.7
3
41.6
39.3
Minor BPS
36.6
-0.9
2.2
49.89
44

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012558
31796968 - 31877200
80233
ENSAPLT00000036505
31796968 - 31877200
80233
ENSAPLT00000027497
31796968 - 31877200
80233
ENSAPLT00000025382
31796883 - 31872691
75809