Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3180831_3183413_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3180831 - 3183413

Intron Length:

2583

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCAAAT

U12 Branch Point Sequence:

AATGCCTGACTT

Flanking Amino Acid:

FKCISGYVVQVGTELIRGVS

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.7

88.4

18.8

Major BPS

62.1

0.3

1.2

67.3

37.8

Major PPT

78.6

0.64

0.8

73.2

31.7

Minor 5ss

29.6

-2.3

2.6

32.7

42.2

Minor BPS

49.7

0.06

1.8

68.36

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002513

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030185

3172253 - 3188700

16448