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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31810347_31813597_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31810347 - 31813597
Intron Length:
3251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
TTTACACCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTGTGTTAATC
Flanking Amino Acid:
EDPKWEFPRDKLTLGKPLGE
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.6
37.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.3
0.61
0.9
67.4
39.2
Minor 5ss
48.3
-0.1
2.4
60.9
38.1
Minor BPS
51.4
0.02
2.1
66
40.4

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012558
31796968 - 31877200
80233
ENSAPLT00000036505
31796968 - 31877200
80233
ENSAPLT00000027497
31796968 - 31877200
80233
ENSAPLT00000025382
31796883 - 31872691
75809