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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31822081_31824102_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31822081 - 31824102
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACACT
5'SS Class:
major
3'SS Sequence:
ACCTGCGATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAT
U12 Branch Point Sequence:
CCCTCCCGAAAA
Flanking Amino Acid:
FHTAWLTVLPAPEKEKEYPT
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
70.4
39.7
Major BPS
63.5
0.34
1.4
57.1
49.4
Major PPT
61.1
0.25
1
50.6
42.5
Minor 5ss
47.5
-0.2
2.7
67.2
43.7
Minor BPS
46
-0.3
1.9
54.03
44.1

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012558
31796968 - 31877200
80233