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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31824248_31826765_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31824248 - 31826765
Intron Length:
2518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTCTAG
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
DGLPYLQVLKAAGVNTTDKE
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
44
-0.3
1.7
44.2
48.3
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012558
31796968 - 31877200
80233