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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31826035_31826765_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31826035 - 31826765
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TATTGGTCTATT
Flanking Amino Acid:
DGLPYLQVLKHSGINSSNAE
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
65
0.37
1.3
75
40
Major PPT
71.5
0.49
0.9
63.2
42.9
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
40.3
-0.6
2.7
64.86
45.9

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036505
31796968 - 31877200
80233
ENSAPLT00000027497
31796968 - 31877200
80233
ENSAPLT00000025382
31796883 - 31872691
75809