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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31826957_31842512_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31826957 - 31842512
Intron Length:
15556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCATCTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCCCTCTCACTC
Flanking Amino Acid:
INHTYHLDVVERSPHRPILQ
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
81.8
31.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
61.9
0.27
1
57.6
37.1
Minor 5ss
36.5
-1.5
2.7
46.6
41.8
Minor BPS
45.1
-0.3
1.7
50.84
40.8

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025382
31796883 - 31872691
75809
ENSAPLT00000012558
31796968 - 31877200
80233
ENSAPLT00000036505
31796968 - 31877200
80233
ENSAPLT00000027497
31796968 - 31877200
80233