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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3183529_3184806_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3183529 - 3184806
Intron Length:
1278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TGTCTGTCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AAAACCTAACCT
Flanking Amino Acid:
ILGPTGSGKSSLLDVLAARK
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.3
73.2
37.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
68
0.4
1.1
67.9
38
Minor 5ss
34.4
-1.8
2.8
44.5
37.1
Minor BPS
48.3
-0
2
65.43
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002513
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030185
3172253 - 3188700
16448
ENSAPLT00000021621
3172253 - 3188700
16448
ENSAPLT00000002570
3172253 - 3188700
16448