About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31842637_31849212_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
31842637 - 31849212
Intron Length:
6576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
GCAACCCCACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
AAGATCTCAATT
Flanking Amino Acid:
KQEHRIGGYKVRNQHWSLIM
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
54.9
0.11
1
44.6
37.3
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
51.7
0.13
1.5
64.36
40.1

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027497
31796968 - 31877200
80233
ENSAPLT00000025382
31796883 - 31872691
75809
ENSAPLT00000012558
31796968 - 31877200
80233
ENSAPLT00000036505
31796968 - 31877200
80233