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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3184867_3185488_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3184867 - 3185488
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAC
U12 Branch Point Sequence:
TTGGGAATAACT
Flanking Amino Acid:
TVEKKILQNVYGIMKPGLNA
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.3
33.2
Major BPS
52.4
0.06
1.2
56
37.3
Major PPT
89.7
0.89
0.6
88.2
21.7
Minor 5ss
43.3
-0.7
2.7
55.8
36.3
Minor BPS
45.3
-0.2
2.3
69.87
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002513
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021621
3172253 - 3188700
16448
ENSAPLT00000002570
3172253 - 3188700
16448
ENSAPLT00000030185
3172253 - 3188700
16448