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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31856026_31856714_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31856026 - 31856714
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATG
Flanking Amino Acid:
DTLYFIVNVTDALSSGDDED
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.1
0.66
1
74
40.3
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
72.1
0.56
1.2
71.31
36.2

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027497
31796968 - 31877200
80233
ENSAPLT00000025382
31796883 - 31872691
75809
ENSAPLT00000012558
31796968 - 31877200
80233