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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31856982_31872434_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31856982 - 31872434
Intron Length:
15453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
TCCACCTTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAC
U12 Branch Point Sequence:
TTTCCTTCCACC
Flanking Amino Acid:
VVEDATLEPEEPPTKYQISQ
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
55.1
0.13
1.3
67.8
38.2
Major PPT
74.2
0.54
0.8
68.3
31.7
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
53.7
0.1
2
72.01
39.2

Associated Gene:

Gene:
FGFR2
Ensembl Gene ID:
ENSAPLG00000011952
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012558
31796968 - 31877200
80233
ENSAPLT00000027497
31796968 - 31877200
80233
ENSAPLT00000025382
31796883 - 31872691
75809