Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31945079_31948206_R

Intron Information:

Intron Rank:

141729

Intron Class:

major

Intron Phase:

Intron Coordinates:

31945079 - 31948206

Intron Length:

3128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTTTA

5'SS Class:

strong_major

3'SS Sequence:

CACCTCCTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGCAC

U12 Branch Point Sequence:

TTTCTGTGCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

Major BPS

-0

1.5

63.1

44.5

Major PPT

72.7

0.51

0.8

69.5

30.8

Minor 5ss

43.8

-0.7

2.8

58.6

45.8

Minor BPS

43.8

-0.5

2.5

64.1

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045985

31944907 - 31952474

7568

ENSAPLT00000027826

31944907 - 31963348

18442