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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31952274_31963087_R

Intron Information:

Intron Rank:
141731
Intron Class:
major
Intron Phase:
Intron Coordinates:
31952274 - 31963087
Intron Length:
10814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTAATTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
CTCTGGTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
68.3
0.41
1.1
65.5
45
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
48.8
-0
2.4
70.75
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023612
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027826
31944907 - 31963348
18442