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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31967528_31985539_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31967528 - 31985539
Intron Length:
18012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTCTGATT
Flanking Amino Acid:
YSRFNQDTKAVDEGRVKELG
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
67.9
0.65
1.6
87.59
31.4

Associated Gene:

Gene:
ATE1
Ensembl Gene ID:
ENSAPLG00000012854
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042394
31967349 - 32052293
84945
ENSAPLT00000019697
31967349 - 32052293
84945
ENSAPLT00000013449
31967349 - 32052293
84945