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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32015823_32021544_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32015823 - 32021544
Intron Length:
5722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGATAATTATAT
Flanking Amino Acid:
TRFLCDSPLEAENPPNGPEC
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
77
0.61
1
69.1
41.8
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
45.6
-0.2
2.1
65.89
43.4

Associated Gene:

Gene:
ATE1
Ensembl Gene ID:
ENSAPLG00000012854
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042394
31967349 - 32052293
84945
ENSAPLT00000019697
31967349 - 32052293
84945
ENSAPLT00000013449
31967349 - 32052293
84945