About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32021578_32039539_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32021578 - 32039539
Intron Length:
17962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAAGG
5'SS Class:
major
3'SS Sequence:
TACCTTGATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATGAATC
Flanking Amino Acid:
DPPDKPTINQFTRFLCDSPL
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.3
66.4
45.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71
0.47
1
65.5
39.8
Minor 5ss
28.3
-2.5
2.7
32.3
41.8
Minor BPS
51.9
0.04
2.1
72.52
38.5

Associated Gene:

Gene:
ATE1
Ensembl Gene ID:
ENSAPLG00000012854
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019697
31967349 - 32052293
84945